TODO

Next:

• [] references
  • [] yaml
  • [] add bib file
  • [] add physcraper citation
  • [] add references section
• [] describe the output trees in number of tips, root, branch lengths, resolved nodes, etc.
• [] can we get the ingroup of an otol stored tree with rotl?
• [] alignment section:
  • [] explain where the alignment is saved when downloaded with physcraper
  • [] add a screen snippet of it
  • [] add screenshots of treebase finding the alignment from the original tree

Done:

• add merced cluster nsf grant to acknowledgments
• add a comparison section