The goal of physcraperex R package is to present tools for visualizing and analysing results from Physcraper, a python toolkit for updating existing phylogenetic knowledge with new molecular data.
Physcraper’s documentation is available at https://physcraper.readthedocs.io.
For now, you can only install the development version of the physcraperex package with
devtools::install_github("McTavishLab/physcraperex")
For instructions on how to install Physcraper go to the documentation website.
Browse the Articles section of the physcraperex website to find various examples showing usage of available visualization functions.
To build this website, we used the R package pkgdown. We ran once:
usethis::use_pkgdown()And then the following every time we wanted to update the package:
pkgdown::build_site()