Plot a tree with branches colored according to molecular data, method 1

Plot a tree with branches colored according to molecular data, method 1

plot_branches_method1(
  x,
  tip_label = "otu",
  drop_outgroup = TRUE,
  ladderize_tree = TRUE,
  color = "red",
  ...
)

Arguments

x

A list from get_tip_values
tip_label

A character vector. Can be one of "otu" or "taxon"
drop_outgroup

Boolean
ladderize_tree

Boolean

Value

a plot

Author

Emily Jane McTavish

Examples

treefile = 'data/pg_2827_tree6577/run_pg_2827tree6577_run4/RAxML_bestTree.2020-07-31'
otufile = 'data/pg_2827_tree6577/outputs_pg_2827tree6577/otu_info_pg_2827tree6577.csv'